Tools
SGT Analyser
The SGT-Analyser is an tool for the automated evaluation of antibiotic synergisms based on the checkerboard-assay.
By importing the raw excel-file from either a Tecan Sunrise or Tecan Infinte the user receives various plots and results-file as well as diagrams for each sample. SGT_Analyser is also available via google colab for people without coding knowledge here.
clonepool
Increased PCR screening capacity using a multi-replicate pooling scheme.
docker pipelines
This is a pipeline collection containing various tools in an easy install free nextflow environment. You dont need to install any tools with the exeption of docker and nextflow.
py_grep
Search-tool for excel-, csv- and tsv-files to easily filter them for one or multiple search-terms as well as (non-)empty cells.
NCBI_pathogen_prospector
Tool for the automated download and subsequent ABRicate-analysis of fasta-files from NCBI Assembly using a list of Assembly accession-nrs. Includes also the option to download MIC-data from NCBI Biosample given a list of Biosample accession-nrs.